Variant report

Variant	rs7542653
Chromosome Location	chr1:213276962-213276963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213259737..213262377-chr1:213276019..213278421,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11804466	1.00[AMR][1000 genomes]
rs6668523	1.00[AMR][1000 genomes]
rs7530371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7543365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392967	chr1:213271844-213490132	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213229400-213283400	Weak transcription	Hela-S3	cervix
2	chr1:213244200-213296200	Weak transcription	NHDF-Ad	bronchial
3	chr1:213246800-213283800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:213251200-213293000	Weak transcription	NH-A	brain
5	chr1:213252600-213297200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:213253200-213277600	Weak transcription	Gastric	stomach
7	chr1:213254800-213297400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:213255200-213279400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:213256800-213284000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:213258400-213280600	Weak transcription	A549	lung
11	chr1:213258600-213277400	Weak transcription	Psoas Muscle	Psoas
12	chr1:213258800-213284200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:213259800-213284000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:213261400-213280800	Weak transcription	Primary T cells from cord blood	blood
15	chr1:213261400-213280800	Weak transcription	Stomach Mucosa	stomach
16	chr1:213261400-213284000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:213261600-213280000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:213261600-213280400	Weak transcription	K562	blood
19	chr1:213261600-213281200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:213261600-213283800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr1:213261600-213283800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:213261600-213283800	Weak transcription	HSMMtube	muscle
23	chr1:213261600-213284000	Weak transcription	Pancreas	Pancrea
24	chr1:213261600-213284000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:213261600-213293000	Weak transcription	NHLF	lung
26	chr1:213261600-213296000	Weak transcription	Lung	lung
27	chr1:213261600-213309200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr1:213261600-213327400	Weak transcription	Aorta	Aorta
29	chr1:213261800-213284000	Weak transcription	Left Ventricle	heart
30	chr1:213261800-213285200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:213262000-213277800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:213262200-213284400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr1:213262600-213280600	Weak transcription	Osteobl	bone
34	chr1:213262600-213284400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:213263200-213284000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr1:213268200-213281600	Weak transcription	HepG2	liver
37	chr1:213268400-213284400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr1:213268600-213284400	Weak transcription	Brain Angular Gyrus	brain
39	chr1:213268800-213282200	Weak transcription	Brain Anterior Caudate	brain
40	chr1:213269200-213278200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr1:213269200-213293000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr1:213269200-213296200	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:213269400-213284000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr1:213269400-213308400	Weak transcription	Ovary	ovary
45	chr1:213269600-213280600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr1:213269600-213311800	Weak transcription	Primary B cells from cord blood	blood
47	chr1:213269800-213284000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr1:213269800-213284000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr1:213269800-213285800	Weak transcription	Dnd41	blood
50	chr1:213270000-213296000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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