The 2.0 version of rSNPBase

Variant report

Variant rs7543365
Chromosome Location chr1:213362002-213362003
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213301000-213371000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:213301000-213374800 Weak transcription HSMM muscle
3 chr1:213310000-213370400 Weak transcription Duodenum Mucosa Duodenum
4 chr1:213326600-213422200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:213328200-213387200 Weak transcription Spleen Spleen
6 chr1:213337800-213374400 Weak transcription Muscle Satellite Cultured Cells --
7 chr1:213340600-213424600 Weak transcription Pancreas Pancrea
8 chr1:213345600-213404600 Weak transcription Osteobl bone
9 chr1:213346200-213387400 Weak transcription Gastric stomach
10 chr1:213350400-213383200 Weak transcription Placenta Placenta
11 chr1:213357800-213387200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:213358000-213375000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:213358200-213362600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
14 chr1:213359000-213363200 Weak transcription Psoas Muscle Psoas
15 chr1:213359400-213364800 Weak transcription HSMMtube muscle
16 chr1:213359600-213362600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr1:213360000-213362400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:213360000-213371400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:213360200-213362600 Strong transcription Fetal Stomach stomach
20 chr1:213360200-213363800 Weak transcription Fetal Muscle Trunk muscle
21 chr1:213360200-213368000 Weak transcription Right Ventricle heart
22 chr1:213360400-213363000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:213360400-213363200 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:213360400-213363800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:213360400-213369600 Weak transcription Liver Liver
26 chr1:213360400-213371000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:213360400-213371000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:213360400-213371000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:213360400-213371200 Weak transcription Brain Inferior Temporal Lobe brain
30 chr1:213360400-213373200 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr1:213360400-213405200 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr1:213360600-213363200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:213360600-213363800 Weak transcription Thymus Thymus
34 chr1:213360600-213367800 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:213360600-213370400 Weak transcription Primary B cells from cord blood blood
36 chr1:213360600-213370800 Weak transcription Fetal Lung lung
37 chr1:213360600-213378000 Weak transcription Stomach Smooth Muscle stomach
38 chr1:213360800-213372200 Weak transcription Left Ventricle heart
39 chr1:213361600-213363800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:213361600-213386600 Weak transcription Aorta Aorta
41 chr1:213361800-213366400 Weak transcription Ovary ovary
42 chr1:213361800-213367400 Weak transcription Primary hematopoietic stem cells blood
43 chr1:213361800-213367600 Weak transcription Monocytes-CD14+_RO01746 blood
44 chr1:213362000-213364000 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr1:213362000-213370400 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015