The 2.0 version of rSNPBase

Variant report

Variant rs7544619
Chromosome Location chr1:95491250-95491251
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95480000-95508800 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:95480600-95491400 Weak transcription Fetal Intestine Small intestine
3 chr1:95484600-95495000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr1:95484800-95491600 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr1:95484800-95494600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:95485000-95500400 Weak transcription Placenta Amnion Placenta Amnion
7 chr1:95485200-95507000 Weak transcription Fetal Heart heart
8 chr1:95486600-95494600 Weak transcription HepG2 liver
9 chr1:95487400-95494600 Weak transcription Esophagus oesophagus
10 chr1:95488000-95507000 Weak transcription Ovary ovary
11 chr1:95488200-95491400 Weak transcription Fetal Stomach stomach
12 chr1:95488200-95492800 Weak transcription Fetal Brain Male brain
13 chr1:95488200-95499400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:95488200-95505400 Weak transcription Pancreas Pancrea
15 chr1:95488200-95507000 Weak transcription Rectal Smooth Muscle rectum
16 chr1:95488200-95537600 Weak transcription Right Ventricle heart
17 chr1:95488400-95494200 Weak transcription Brain Anterior Caudate brain
18 chr1:95488400-95494800 Weak transcription Stomach Smooth Muscle stomach
19 chr1:95488400-95507000 Weak transcription Brain Angular Gyrus brain
20 chr1:95488400-95507800 Weak transcription Brain Substantia Nigra brain
21 chr1:95488600-95493600 Weak transcription Primary T cells fromperipheralblood blood
22 chr1:95488600-95507800 Weak transcription Colon Smooth Muscle Colon
23 chr1:95488800-95494400 Weak transcription Primary B cells from peripheral blood blood
24 chr1:95488800-95505400 Weak transcription Small Intestine intestine
25 chr1:95489000-95492200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:95489400-95517200 Weak transcription Aorta Aorta
27 chr1:95489600-95491800 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr1:95489600-95492600 Weak transcription NHDF-Ad bronchial
29 chr1:95489800-95492400 Weak transcription HUVEC blood vessel
30 chr1:95489800-95494200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr1:95489800-95499600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:95490000-95494600 Weak transcription NHEK skin
33 chr1:95490200-95491400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:95490200-95491600 Strong transcription Rectal Mucosa Donor 29 rectum
35 chr1:95490200-95491800 ZNF genes & repeats Fetal Muscle Leg muscle
36 chr1:95490200-95492000 Weak transcription NHLF lung
37 chr1:95490200-95494600 Weak transcription GM12878-XiMat blood
38 chr1:95490400-95492400 Weak transcription Muscle Satellite Cultured Cells --
39 chr1:95490400-95492400 Weak transcription Osteobl bone
40 chr1:95490600-95491400 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:95490600-95491400 ZNF genes & repeats Fetal Brain Female brain
42 chr1:95490600-95491600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
43 chr1:95490600-95492400 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
44 chr1:95490600-95493200 Weak transcription Primary T helper cells fromperipheralblood blood
45 chr1:95490600-95493400 Strong transcription Liver Liver
46 chr1:95490800-95491400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:95490800-95491400 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:95490800-95491400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:95490800-95491400 ZNF genes & repeats Adipose Nuclei Adipose
50 chr1:95490800-95491400 ZNF genes & repeats Brain Germinal Matrix brain

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Last update: Aug 31, 2015