Variant report

Variant	rs859119
Chromosome Location	chr1:95305908-95305909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1268475	1.00[AFR][1000 genomes]
rs7544619	1.00[AFR][1000 genomes]
rs859053	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95286600-95311800	Weak transcription	Placenta	Placenta
2	chr1:95286600-95319800	Weak transcription	Lung	lung
3	chr1:95287000-95306200	Weak transcription	Aorta	Aorta
4	chr1:95287000-95308200	Weak transcription	Brain Substantia Nigra	brain
5	chr1:95287000-95319800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:95287800-95320200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:95288400-95312400	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:95289000-95306400	Weak transcription	Fetal Kidney	kidney
9	chr1:95289200-95314800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:95289200-95318600	Weak transcription	HSMMtube	muscle
11	chr1:95291400-95307000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:95293400-95306200	Weak transcription	HepG2	liver
13	chr1:95293600-95308000	Weak transcription	Stomach Mucosa	stomach
14	chr1:95293600-95319800	Weak transcription	Esophagus	oesophagus
15	chr1:95293600-95320000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:95293800-95306400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:95294000-95320400	Weak transcription	Small Intestine	intestine
18	chr1:95294200-95307200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:95294400-95306000	Weak transcription	Gastric	stomach
20	chr1:95294600-95306200	Weak transcription	Colonic Mucosa	Colon
21	chr1:95295200-95306000	Weak transcription	Pancreas	Pancrea
22	chr1:95298800-95308600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:95299200-95306200	Weak transcription	Fetal Stomach	stomach
24	chr1:95299200-95312800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:95301800-95328600	Strong transcription	Fetal Intestine Large	intestine
26	chr1:95302400-95306400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:95303000-95306400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:95303200-95308400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr1:95303800-95316800	Weak transcription	Left Ventricle	heart
30	chr1:95304000-95306200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:95304000-95306200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:95304400-95314600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr1:95304600-95306200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:95304800-95308800	Strong transcription	Fetal Intestine Small	intestine
35	chr1:95305400-95318200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr1:95305600-95315800	Weak transcription	Brain Anterior Caudate	brain
37	chr1:95305800-95311200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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