Variant report

Variant	rs75476540
Chromosome Location	chr17:37638076-37638077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
10	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
12	esv3432473	chr17:37637788-37638077	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37619800-37649200	Weak transcription	Esophagus	oesophagus
2	chr17:37620400-37650600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:37622200-37647000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr17:37623000-37641000	Strong transcription	Fetal Thymus	thymus
5	chr17:37623600-37642000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:37624000-37641600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:37624000-37680400	Weak transcription	Fetal Brain Male	brain
8	chr17:37624000-37690600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:37624200-37639800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:37624800-37643000	Strong transcription	Fetal Stomach	stomach
11	chr17:37625200-37641000	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr17:37625200-37641800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:37625400-37639800	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr17:37625400-37639800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr17:37625400-37641000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr17:37625400-37641400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr17:37626600-37641000	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr17:37626600-37690600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr17:37626800-37641000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:37626800-37641000	Strong transcription	Liver	Liver
21	chr17:37626800-37641600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr17:37626800-37642800	Strong transcription	Fetal Intestine Large	intestine
23	chr17:37627000-37640400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr17:37627000-37640400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr17:37627000-37640800	Strong transcription	Fetal Muscle Leg	muscle
26	chr17:37627000-37661600	Strong transcription	Fetal Intestine Small	intestine
27	chr17:37627200-37639200	Strong transcription	Thymus	Thymus
28	chr17:37627800-37646800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr17:37628000-37642600	Weak transcription	Psoas Muscle	Psoas
30	chr17:37628000-37646800	Weak transcription	Colonic Mucosa	Colon
31	chr17:37628200-37642000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr17:37628200-37646800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr17:37628400-37646800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr17:37628400-37646800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr17:37628400-37682200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr17:37628600-37649000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr17:37628800-37649200	Weak transcription	Aorta	Aorta
38	chr17:37629000-37649000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr17:37629200-37642200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr17:37629200-37649600	Weak transcription	Gastric	stomach
41	chr17:37629200-37655400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr17:37629400-37649000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr17:37630800-37646800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr17:37630800-37646800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr17:37630800-37657200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr17:37631000-37640200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr17:37631000-37640400	Weak transcription	K562	blood
48	chr17:37631000-37644200	Weak transcription	NH-A	brain
49	chr17:37631000-37646800	Weak transcription	Fetal Kidney	kidney
50	chr17:37631000-37647400	Weak transcription	Small Intestine	intestine

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