Variant report

Variant	rs75486952
Chromosome Location	chr12:121409022-121409023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf43-1	chr12:121407641-121410095	ENSG00000241388.2
2	lnc-C12orf43-1	chr12:121408046-121410443	NONHSAT031257

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv899560	chr12:121371233-121560581	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv899561	chr12:121376416-121525591	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv899562	chr12:121376416-121565870	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	esv3357747	chr12:121405281-121427388	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1037195	chr12:121408540-121470375	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121400600-121416000	Weak transcription	Small Intestine	intestine
2	chr12:121403200-121409400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr12:121403800-121411000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:121404800-121409800	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr12:121405200-121415400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr12:121405400-121409200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr12:121406600-121410800	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr12:121406600-121412400	Genic enhancers	Liver	Liver
9	chr12:121407000-121409400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:121407200-121409400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:121407200-121409800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr12:121407400-121409400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:121407400-121409400	Weak transcription	A549	lung
14	chr12:121407400-121410800	Weak transcription	Fetal Stomach	stomach
15	chr12:121407800-121409200	Strong transcription	HepG2	liver
16	chr12:121408000-121414200	Genic enhancers	Fetal Intestine Small	intestine
17	chr12:121408200-121409200	Genic enhancers	Fetal Kidney	kidney
18	chr12:121408200-121409200	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr12:121408200-121417800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr12:121408400-121409200	Weak transcription	Stomach Mucosa	stomach
21	chr12:121408400-121411000	Weak transcription	Colonic Mucosa	Colon
22	chr12:121408400-121415400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr12:121408800-121410600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:121409000-121409600	Enhancers	Esophagus	oesophagus
25	chr12:121409000-121409600	Genic enhancers	Pancreas	Pancrea
26	chr12:121409000-121409800	Enhancers	Placenta	Placenta
27	chr12:121409000-121409800	Genic enhancers	Gastric	stomach
28	chr12:121409000-121410000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr12:121409000-121410000	Enhancers	Primary hematopoietic stem cells	blood
30	chr12:121409000-121410200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr12:121409000-121412400	Genic enhancers	Fetal Intestine Large	intestine

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