Variant report

Variant	rs7551329
Chromosome Location	chr1:84931248-84931249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84928850..84931617-chr1:84944239..84946361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117133	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10493754	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs11163973	1.00[ASN][1000 genomes]
rs11163974	0.92[ASN][1000 genomes]
rs11163975	1.00[ASN][1000 genomes]
rs11163976	1.00[ASN][1000 genomes]
rs11163982	0.91[ASN][1000 genomes]
rs11163985	0.91[ASN][1000 genomes]
rs11163987	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11163993	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11164001	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12075532	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs13093	0.91[ASN][1000 genomes]
rs17110164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17110485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17110590	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[ASN][1000 genomes]
rs1849880	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1891126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs2911600	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2911602	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs2945138	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs3768247	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs56876287	0.91[ASN][1000 genomes]
rs6576712	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6658034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6658974	0.91[ASN][1000 genomes]
rs6660306	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6662644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6662683	0.91[ASN][1000 genomes]
rs6666052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6666572	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6668752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6669593	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6676502	0.88[ASN][1000 genomes]
rs6684882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6688208	1.00[JPT][hapmap]
rs6690906	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6698596	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6701280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6704452	0.91[ASN][1000 genomes]
rs72948416	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7515928	0.83[EUR][1000 genomes]
rs7524576	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7525512	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7539413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7541850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7541909	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7547208	0.91[ASN][1000 genomes]
rs7554311	1.00[CHB][hapmap]
rs7555773	0.91[ASN][1000 genomes]
rs7555821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7551329	DDAH1	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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