Variant report

Variant	rs7551643
Chromosome Location	chr1:225558622-225558623
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1011319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs10915816	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs11551874	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17557867	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2230419	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs3766929	0.81[CEU][hapmap]
rs4576637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4653635	0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs4999299	0.80[EUR][1000 genomes]
rs7406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs9783086	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945672	chr1:225339532-225561349	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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