Variant report

Variant rs7552454
Chromosome Location chr1:144938879-144938880
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144933200-144940800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr1:144933200-144941000 Weak transcription Aorta Aorta
3 chr1:144933200-144941000 Weak transcription Ovary ovary
4 chr1:144933200-144943800 Weak transcription Lung lung
5 chr1:144933400-144939000 Strong transcription K562 blood
6 chr1:144933400-144940000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:144933400-144940000 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:144933400-144940200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr1:144933400-144940400 Weak transcription Colon Smooth Muscle Colon
10 chr1:144933400-144940600 Weak transcription Brain Substantia Nigra brain
11 chr1:144933400-144940600 Weak transcription Rectal Smooth Muscle rectum
12 chr1:144934000-144940200 Weak transcription Brain Anterior Caudate brain
13 chr1:144934000-144940200 Weak transcription NH-A brain
14 chr1:144934000-144940800 Weak transcription Brain Angular Gyrus brain
15 chr1:144934000-144949000 Weak transcription Spleen Spleen
16 chr1:144934400-144942600 Weak transcription Right Ventricle heart
17 chr1:144935400-144940400 Strong transcription Left Ventricle heart
18 chr1:144935400-144941000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:144935400-144944000 Genic enhancers Skeletal Muscle Male skeletal muscle
20 chr1:144935400-144944000 Genic enhancers Skeletal Muscle Female skeletal muscle
21 chr1:144936000-144939200 Enhancers Small Intestine intestine
22 chr1:144936400-144939200 Enhancers Fetal Kidney kidney
23 chr1:144936400-144939400 Enhancers Rectal Mucosa Donor 31 rectum
24 chr1:144936400-144939600 Enhancers Liver Liver
25 chr1:144936400-144939800 Enhancers Psoas Muscle Psoas
26 chr1:144936600-144939200 Strong transcription Brain Germinal Matrix brain
27 chr1:144936600-144939400 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:144936600-144939400 Enhancers HepG2 liver
29 chr1:144936600-144948800 Weak transcription Pancreas Pancrea
30 chr1:144936800-144939000 Strong transcription Fetal Heart heart
31 chr1:144936800-144941000 Weak transcription Hela-S3 cervix
32 chr1:144937000-144940200 Weak transcription Brain Hippocampus Middle brain
33 chr1:144937000-144940400 Weak transcription Brain Inferior Temporal Lobe brain
34 chr1:144937000-144940600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr1:144937000-144940600 Weak transcription Stomach Smooth Muscle stomach
36 chr1:144937000-144941000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:144937000-144943800 Weak transcription Esophagus oesophagus
38 chr1:144937200-144939000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:144937200-144940600 Weak transcription Fetal Brain Male brain
40 chr1:144937200-144940800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:144937200-144940800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:144937200-144940800 Weak transcription HMEC breast
43 chr1:144937200-144941000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr1:144937200-144941000 Weak transcription NHEK skin
45 chr1:144937200-144943800 Weak transcription Gastric stomach
46 chr1:144937400-144939800 Weak transcription Fetal Stomach stomach
47 chr1:144937400-144940200 Strong transcription HSMM muscle
48 chr1:144937400-144948200 Weak transcription Primary B cells from cord blood blood
49 chr1:144937600-144939200 Enhancers Stomach Mucosa stomach
50 chr1:144937600-144939400 Strong transcription Muscle Satellite Cultured Cells --

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