Variant report

Variant rs942445
Chromosome Location chr1:144942045-144942046
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144933200-144943800 Weak transcription Lung lung
2 chr1:144934000-144949000 Weak transcription Spleen Spleen
3 chr1:144934400-144942600 Weak transcription Right Ventricle heart
4 chr1:144935400-144944000 Genic enhancers Skeletal Muscle Male skeletal muscle
5 chr1:144935400-144944000 Genic enhancers Skeletal Muscle Female skeletal muscle
6 chr1:144936600-144948800 Weak transcription Pancreas Pancrea
7 chr1:144937000-144943800 Weak transcription Esophagus oesophagus
8 chr1:144937200-144943800 Weak transcription Gastric stomach
9 chr1:144937400-144948200 Weak transcription Primary B cells from cord blood blood
10 chr1:144937800-144942400 Weak transcription Thymus Thymus
11 chr1:144937800-144948400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr1:144938600-144943600 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr1:144938800-144942400 Weak transcription Fetal Muscle Trunk muscle
14 chr1:144939200-144942200 Weak transcription Small Intestine intestine
15 chr1:144939200-144948800 Weak transcription Colonic Mucosa Colon
16 chr1:144939400-144943200 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr1:144939400-144943200 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr1:144939400-144943200 Weak transcription HepG2 liver
19 chr1:144939800-144944000 Enhancers Fetal Stomach stomach
20 chr1:144939800-144952200 Strong transcription K562 blood
21 chr1:144940000-144942600 Enhancers Fetal Adrenal Gland Adrenal Gland
22 chr1:144940000-144943200 Enhancers Cortex derived primary cultured neurospheres brain
23 chr1:144940200-144942200 Enhancers HUES64 Cell Line embryonic stem cell
24 chr1:144940200-144942800 Enhancers iPS-15b Cell Line embryonic stem cell
25 chr1:144940200-144942800 Enhancers Placenta Amnion Placenta Amnion
26 chr1:144940200-144943200 Enhancers iPS-18 Cell Line embryonic stem cell
27 chr1:144940400-144942400 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr1:144940400-144942600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:144940400-144943000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:144940400-144944000 Enhancers Colon Smooth Muscle Colon
31 chr1:144940600-144942200 Enhancers Stomach Smooth Muscle stomach
32 chr1:144940600-144942400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
33 chr1:144940600-144943400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr1:144940600-144943400 Genic enhancers Fetal Muscle Leg muscle
35 chr1:144940600-144944000 Enhancers Rectal Smooth Muscle rectum
36 chr1:144940800-144942200 Enhancers Duodenum Smooth Muscle Duodenum
37 chr1:144940800-144942200 Enhancers HMEC breast
38 chr1:144940800-144942600 Enhancers Primary T cells from cord blood blood
39 chr1:144940800-144942600 Enhancers Primary T helper naive cells fromperipheralblood blood
40 chr1:144940800-144942600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:144940800-144944000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:144941000-144942200 Weak transcription Brain Substantia Nigra brain
43 chr1:144941000-144942600 Genic enhancers Placenta Placenta
44 chr1:144941000-144946200 Weak transcription Fetal Intestine Large intestine
45 chr1:144941200-144942400 Enhancers Primary T helper cells fromperipheralblood blood
46 chr1:144941200-144942800 Genic enhancers Fetal Heart heart
47 chr1:144941200-144943000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:144941200-144943800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr1:144941200-144946400 Weak transcription Fetal Intestine Small intestine
50 chr1:144941400-144942800 Genic enhancers Brain Anterior Caudate brain

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