Variant report

Variant	rs7552884
Chromosome Location	chr1:220640309-220640310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:220640309-220640359	CMK	blood:	n/a
2	chr1:220640309-220640359	GM12892	blood:	n/a
3	chr1:220640309-220640359	AoSMC	blood vessel:	n/a
4	chr1:220640309-220640359	BE2_C	brain:	n/a
5	chr1:220640309-220640359	AG10803	skin:	n/a
6	chr1:220640309-220640359	GM06990	blood:	n/a
7	chr1:220640309-220640359	HPAEpiC	pulmonary alveolar:	n/a
8	chr1:220640309-220640359	HNPCEpiC	eye:	n/a
9	chr1:220640309-220640359	PANC-1	pancreas:	n/a
10	chr1:220640309-220640359	PrEC	prostate:	n/a
11	chr1:220640309-220640359	HL-60	blood:	n/a
12	chr1:220640309-220640359	HMEC	breast:	n/a
13	chr1:220640309-220640359	NHBE	bronchial:	n/a
14	chr1:220640309-220640359	Hepatocyte	liver:	n/a
15	chr1:220640309-220640359	AG09319	gingival:	n/a
16	chr1:220640309-220640359	ECC-1	luminal epithelium:	n/a
17	chr1:220640309-220640359	LNCaP	prostate:	n/a
18	chr1:220640309-220640359	NH-A	brain:	n/a
19	chr1:220640309-220640359	T-47D	breast:	n/a
20	chr1:220640309-220640359	HRPEpiC	eye:	n/a
21	chr1:220640309-220640359	HEEpiC	esophagus:	n/a
22	chr1:220640309-220640359	RPTEC	kidney:	n/a
23	chr1:220640309-220640359	HAEpiC	amniotic membrane:	n/a
24	chr1:220640309-220640359	PFSK-1	brain:	n/a
25	chr1:220640309-220640359	AG04449	skin:	fetal
26	chr1:220640309-220640359	IMR90	lung:	fetal
27	chr1:220640309-220640359	NHDF-neo	bronchial:	n/a
28	chr1:220640309-220640359	SKMC	muscle:	n/a
29	chr1:220640309-220640359	GM12878	blood:	n/a
30	chr1:220640309-220640359	HCPEpiC	choroid plexus:	n/a
31	chr1:220640309-220640359	U87	brain:	n/a
32	chr1:220640309-220640359	H1-hESC	embryonic stem cell:	embryo
33	chr1:220640309-220640359	ovcar-3	ovarian:	n/a
34	chr1:220640309-220640359	GM12891	blood:	n/a
35	chr1:220640309-220640359	HCT-116	colon:	n/a
36	chr1:220640309-220640359	BJ	skin:	n/a
37	chr1:220640309-220640359	HCM	heart:	n/a
38	chr1:220640309-220640359	Hela-S3	cervix:	n/a
39	chr1:220640309-220640359	HEK293	kidney:	embryo
40	chr1:220640309-220640359	HepG2	liver:	n/a
41	chr1:220640309-220640359	AG04450	lung:	fetal
42	chr1:220640309-220640359	HRE	kidney:	n/a
43	chr1:220640309-220640359	GM19239	blood:	n/a
44	chr1:220640309-220640359	SK-N-MC	brain:	n/a
45	chr1:220640309-220640359	Jurkat	blood:	n/a
46	chr1:220640309-220640359	HUVEC	blood vessel:	n/a
47	chr1:220640309-220640359	MCF10A-Er-Src	breast:	n/a
48	chr1:220640309-220640359	HRCEpiC	kidney:	n/a
49	chr1:220640309-220640359	HCF	heart:	n/a
50	chr1:220640309-220640359	HIPEpiC	eye:	n/a

No data

Variant related genes	Relation type
SLMO2P1	CpG island

rs_ID	r²[population]
rs10495147	0.82[AFR][1000 genomes]
rs7548893	0.82[AFR][1000 genomes]

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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