The 2.0 version of rSNPBase

Variant report

Variant rs7553010
Chromosome Location chr1:214569633-214569634
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
2 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
3 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
4 chr1:214537600-214577000 Weak transcription Stomach Mucosa stomach
5 chr1:214546200-214576000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:214546200-214576200 Weak transcription Right Atrium heart
7 chr1:214547800-214576200 Weak transcription Fetal Heart heart
8 chr1:214554000-214577800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:214554200-214577800 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr1:214556000-214576000 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr1:214556800-214573400 Weak transcription Fetal Kidney kidney
12 chr1:214557800-214576200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:214557800-214578000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:214557800-214589000 Weak transcription Rectal Smooth Muscle rectum
15 chr1:214558000-214576600 Weak transcription Duodenum Mucosa Duodenum
16 chr1:214558000-214578200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr1:214558200-214570600 Weak transcription Dnd41 blood
18 chr1:214558200-214584000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:214560000-214592000 Weak transcription Hela-S3 cervix
20 chr1:214560400-214576600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr1:214560600-214576000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:214560800-214576000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:214563000-214575600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:214563600-214575200 Strong transcription HUVEC blood vessel
25 chr1:214563800-214570800 Strong transcription Fetal Intestine Large intestine
26 chr1:214563800-214575400 Strong transcription Fetal Adrenal Gland Adrenal Gland
27 chr1:214563800-214575400 Strong transcription Fetal Muscle Trunk muscle
28 chr1:214564200-214570600 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr1:214565200-214569800 Strong transcription HUES6 Cell Line embryonic stem cell
30 chr1:214565200-214570600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
31 chr1:214565200-214570800 Strong transcription Left Ventricle heart
32 chr1:214565200-214577200 Strong transcription Fetal Muscle Leg muscle
33 chr1:214565400-214572000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:214565400-214575200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:214565800-214570800 Strong transcription A549 lung
36 chr1:214565800-214575200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr1:214566200-214570000 Strong transcription ES-I3 Cell Line embryonic stem cell
38 chr1:214567000-214576800 Weak transcription Spleen Spleen
39 chr1:214567000-214587600 Weak transcription HepG2 liver
40 chr1:214567400-214570000 Weak transcription iPS-18 Cell Line embryonic stem cell
41 chr1:214567400-214570600 Weak transcription HSMMtube muscle
42 chr1:214567400-214570600 Genic enhancers NHDF-Ad bronchial
43 chr1:214567400-214571000 Genic enhancers Osteobl bone
44 chr1:214567400-214573800 Weak transcription Colon Smooth Muscle Colon
45 chr1:214567400-214574000 Weak transcription Stomach Smooth Muscle stomach
46 chr1:214567400-214574200 Weak transcription Right Ventricle heart
47 chr1:214567400-214578000 Weak transcription Esophagus oesophagus
48 chr1:214567600-214570800 Weak transcription Adipose Nuclei Adipose
49 chr1:214567600-214573400 Weak transcription Placenta Amnion Placenta Amnion
50 chr1:214567600-214576200 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015