Variant report

Variant	rs4655338
Chromosome Location	chr1:214521338-214521339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1134647	0.82[CEU][hapmap]
rs12124666	0.82[CEU][hapmap]
rs2270704	0.82[CEU][hapmap]
rs3013449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4655245	0.82[CEU][hapmap]
rs4655329	1.00[AFR][1000 genomes]
rs4655331	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4655337	1.00[ASN][1000 genomes]
rs6419474	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6540821	0.82[CEU][hapmap]
rs6677732	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7355212	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7419021	0.82[CEU][hapmap]
rs7553010	1.00[ASN][1000 genomes]

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214484800-214522000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:214486200-214526000	Weak transcription	Psoas Muscle	Psoas
3	chr1:214493000-214534600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:214503200-214537800	Weak transcription	Gastric	stomach
5	chr1:214504600-214533200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:214507000-214529800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:214508400-214524600	Weak transcription	Lung	lung
8	chr1:214508400-214524800	Weak transcription	Spleen	Spleen
9	chr1:214508400-214529600	Weak transcription	Pancreas	Pancrea
10	chr1:214508400-214535000	Weak transcription	Esophagus	oesophagus
11	chr1:214508800-214528600	Weak transcription	Fetal Intestine Large	intestine
12	chr1:214509200-214523200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:214511400-214524800	Weak transcription	Right Ventricle	heart
14	chr1:214511400-214529400	Weak transcription	Aorta	Aorta
15	chr1:214511400-214530400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:214511400-214531200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:214511600-214522400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:214511600-214528000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr1:214511800-214528000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:214512000-214521600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:214512000-214537000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:214512400-214524600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:214513600-214552200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr1:214514000-214522600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:214514000-214523200	Strong transcription	Osteobl	bone
26	chr1:214514000-214537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:214514400-214523000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:214514600-214523200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:214514800-214526400	Weak transcription	Fetal Stomach	stomach
30	chr1:214515400-214542600	Weak transcription	Brain Substantia Nigra	brain
31	chr1:214515800-214522400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:214516000-214522200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:214516000-214523200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:214516200-214522800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr1:214516400-214522600	Strong transcription	HSMM	muscle
36	chr1:214517000-214521400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:214517200-214521800	Strong transcription	NHDF-Ad	bronchial
38	chr1:214517200-214522200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:214517400-214522000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:214517800-214521400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr1:214517800-214523200	Weak transcription	Colon Smooth Muscle	Colon
42	chr1:214518000-214522400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:214518000-214524600	Weak transcription	Left Ventricle	heart
44	chr1:214518400-214523800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr1:214518400-214537800	Weak transcription	Fetal Brain Male	brain
46	chr1:214518600-214523200	Weak transcription	A549	lung
47	chr1:214518600-214524800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr1:214518600-214524800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr1:214518600-214529000	Weak transcription	Ovary	ovary
50	chr1:214518800-214522400	Weak transcription	Fetal Heart	heart

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