Variant report

Variant	rs4655331
Chromosome Location	chr1:214486035-214486036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214472980..214474486-chr1:214484951..214486993,2	K562	blood:
2	chr1:214476788..214478292-chr1:214484064..214486758,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10429966	0.81[AMR][1000 genomes]
rs1134647	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12124666	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12127455	1.00[ASN][1000 genomes]
rs2270704	1.00[CEU][hapmap]
rs3013449	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4655245	1.00[CEU][hapmap]
rs4655329	0.87[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655335	1.00[CEU][hapmap]
rs4655338	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs61821362	1.00[ASN][1000 genomes]
rs6419474	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540821	1.00[CEU][hapmap]
rs6540822	1.00[CEU][hapmap]
rs6677732	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691083	1.00[CEU][hapmap]
rs7355212	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7419021	1.00[CEU][hapmap]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214455600-214487800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:214455600-214489000	Weak transcription	Ovary	ovary
3	chr1:214456400-214491800	Weak transcription	Pancreas	Pancrea
4	chr1:214459200-214491400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:214462000-214491800	Weak transcription	NHEK	skin
6	chr1:214469400-214488600	Weak transcription	Fetal Thymus	thymus
7	chr1:214469600-214488400	Weak transcription	Thymus	Thymus
8	chr1:214470600-214488400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:214470600-214488800	Weak transcription	HMEC	breast
10	chr1:214471000-214488000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:214471000-214489000	Weak transcription	A549	lung
12	chr1:214471000-214489400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:214471000-214517400	Weak transcription	Fetal Kidney	kidney
14	chr1:214476600-214492200	Weak transcription	K562	blood
15	chr1:214477000-214489800	Weak transcription	NH-A	brain
16	chr1:214477200-214487000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:214477200-214491600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:214477200-214492200	Weak transcription	Aorta	Aorta
19	chr1:214477400-214487600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:214477400-214489800	Weak transcription	NHLF	lung
21	chr1:214477400-214492200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:214477400-214506400	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:214477400-214506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:214477400-214511000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:214477800-214488000	Weak transcription	Fetal Intestine Large	intestine
26	chr1:214478600-214488800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:214478800-214491800	Weak transcription	Spleen	Spleen
28	chr1:214478800-214492200	Weak transcription	Esophagus	oesophagus
29	chr1:214479000-214489000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:214479000-214503000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:214479200-214487600	Weak transcription	Brain Germinal Matrix	brain
32	chr1:214479200-214491800	Weak transcription	Lung	lung
33	chr1:214479400-214493000	Enhancers	Fetal Heart	heart
34	chr1:214479800-214490000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:214480200-214490800	Weak transcription	Fetal Intestine Small	intestine
36	chr1:214482200-214510600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:214482400-214488200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:214482400-214488800	Weak transcription	Fetal Stomach	stomach
39	chr1:214483000-214490400	Enhancers	Liver	Liver
40	chr1:214483600-214487600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr1:214483600-214488000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr1:214483600-214488200	Weak transcription	Fetal Lung	lung
43	chr1:214483600-214492200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:214483600-214501600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:214483800-214488200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:214483800-214488600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:214483800-214489800	Weak transcription	Osteobl	bone
48	chr1:214484000-214486200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
49	chr1:214484000-214490000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:214484200-214486200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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