Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10889072	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11207109	0.87[ASN][1000 genomes]
rs11207112	1.00[CEU][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs1323838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1581762	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs6659795	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs706411	1.00[CEU][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7515680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549145	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852757	0.96[CEU][hapmap];0.98[TSI][hapmap]
rs852768	1.00[CEU][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs852769	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs852772	0.85[EUR][1000 genomes]
rs852774	0.95[EUR][1000 genomes]
rs852775	0.95[EUR][1000 genomes]
rs852778	0.95[EUR][1000 genomes]
rs852782	0.93[EUR][1000 genomes]
rs852784	0.93[EUR][1000 genomes]
rs852792	0.81[CEU][hapmap]
rs852795	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58257200-58257600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr1:58257200-58258200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:58257400-58258000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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