Variant report

Variant rs7554273
Chromosome Location chr1:162343069-162343070
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:162321200-162357600 Weak transcription Fetal Kidney kidney
2 chr1:162321200-162358000 Weak transcription Spleen Spleen
3 chr1:162323600-162358200 Weak transcription Brain Substantia Nigra brain
4 chr1:162323800-162361400 Weak transcription HUES48 Cell Line embryonic stem cell
5 chr1:162324000-162352600 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr1:162324000-162355800 Weak transcription Brain Anterior Caudate brain
7 chr1:162325600-162359600 Weak transcription Brain Hippocampus Middle brain
8 chr1:162325800-162352600 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr1:162326200-162352000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr1:162326200-162361400 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr1:162326800-162346600 Weak transcription Brain Angular Gyrus brain
12 chr1:162327400-162361600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:162330400-162346200 Strong transcription Cortex derived primary cultured neurospheres brain
14 chr1:162334000-162346000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:162335800-162344600 Enhancers K562 blood
16 chr1:162337000-162353400 Weak transcription Rectal Smooth Muscle rectum
17 chr1:162337200-162356400 Weak transcription Colon Smooth Muscle Colon
18 chr1:162337200-162361600 Weak transcription Right Ventricle heart
19 chr1:162337600-162343400 Enhancers Rectal Mucosa Donor 31 rectum
20 chr1:162337600-162344600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr1:162337600-162351800 Weak transcription Stomach Smooth Muscle stomach
22 chr1:162337600-162352800 Weak transcription Lung lung
23 chr1:162337600-162361600 Weak transcription Adipose Nuclei Adipose
24 chr1:162337800-162344200 Weak transcription Brain Germinal Matrix brain
25 chr1:162337800-162352000 Weak transcription Aorta Aorta
26 chr1:162338000-162343600 Enhancers Rectal Mucosa Donor 29 rectum
27 chr1:162338000-162351200 Weak transcription Brain Cingulate Gyrus brain
28 chr1:162338000-162352400 Weak transcription Brain Inferior Temporal Lobe brain
29 chr1:162338000-162361600 Weak transcription H9 Cell Line embryonic stem cell
30 chr1:162338200-162343800 Weak transcription Placenta Amnion Placenta Amnion
31 chr1:162338200-162351600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr1:162338400-162350800 Weak transcription Pancreas Pancrea
33 chr1:162338600-162343800 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:162338600-162353200 Weak transcription H1 Cell Line embryonic stem cell
35 chr1:162339800-162343400 Weak transcription Fetal Stomach stomach
36 chr1:162340000-162343600 Enhancers Liver Liver
37 chr1:162340200-162352800 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr1:162340400-162344400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:162340600-162344600 Enhancers Placenta Placenta
40 chr1:162340800-162344200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:162340800-162352000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:162341000-162344000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:162341000-162344600 Enhancers HMEC breast
44 chr1:162341200-162343400 Enhancers Colonic Mucosa Colon
45 chr1:162341200-162344600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr1:162341600-162343600 Enhancers Primary hematopoietic stem cells blood
47 chr1:162341600-162343600 Enhancers Primary hematopoietic stem cells short term culture blood
48 chr1:162341600-162344400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:162341600-162344400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:162341600-162344400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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