Variant report

Variant	rs7554630
Chromosome Location	chr1:152384128-152384129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12059943	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12062076	0.91[AFR][1000 genomes]
rs12082215	0.87[AFR][1000 genomes]
rs16834012	0.83[AFR][1000 genomes]
rs16842865	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2146114	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6587667	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6676954	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv516541	chr1:152376710-152390452	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152381000-152385800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:152382200-152384800	Enhancers	Spleen	Spleen
3	chr1:152382200-152385600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:152382400-152385600	Enhancers	Pancreas	Pancrea
5	chr1:152383000-152384600	Enhancers	Fetal Lung	lung
6	chr1:152383400-152386600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:152383800-152384200	Enhancers	Brain Hippocampus Middle	brain
8	chr1:152383800-152384200	Enhancers	Right Atrium	heart
9	chr1:152384000-152387000	Active TSS	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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