Variant report

Variant	rs16834012
Chromosome Location	chr1:152365232-152365233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12059943	0.83[AFR][1000 genomes]
rs12062076	0.91[AFR][1000 genomes]
rs12082215	0.87[AFR][1000 genomes]
rs13375665	1.00[ASN][1000 genomes]
rs16833966	1.00[ASN][1000 genomes]
rs16842865	0.91[AFR][1000 genomes]
rs17359691	1.00[ASN][1000 genomes]
rs1858481	0.83[ASN][1000 genomes]
rs28726673	0.83[ASN][1000 genomes]
rs3126090	0.83[ASN][1000 genomes]
rs3126093	0.83[ASN][1000 genomes]
rs3134871	0.83[ASN][1000 genomes]
rs3134873	0.83[ASN][1000 genomes]
rs6587667	0.87[AFR][1000 genomes]
rs72477395	1.00[ASN][1000 genomes]
rs7354940	1.00[ASN][1000 genomes]
rs7536684	0.83[ASN][1000 genomes]
rs7554630	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152363800-152368000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:152363800-152368200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:152363800-152368200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:152364000-152366600	Enhancers	NHEK	skin
5	chr1:152364600-152366400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:152364800-152366200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:152364800-152366800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:152365000-152365800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:152365000-152365800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:152365000-152366000	Bivalent Enhancer	HMEC	breast
11	chr1:152365200-152365600	Enhancers	Stomach Mucosa	stomach
12	chr1:152365200-152365800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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