Variant report

Variant	rs755497
Chromosome Location	chr6:33734419-33734420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33728564..33732066-chr6:33733725..33737558,5	MCF-7	breast:
2	chr6:33712629..33714583-chr6:33734231..33736589,2	MCF-7	breast:
3	chr6:33734321..33736255-chr6:34120616..34122226,2	MCF-7	breast:
4	chr6:33724946..33727778-chr6:33732399..33734777,2	MCF-7	breast:
5	chr6:33733922..33735455-chr6:33738926..33740913,2	MCF-7	breast:
6	chr6:33733658..33736198-chr6:33737954..33739952,2	K562	blood:
7	chr6:33717632..33719728-chr6:33734198..33737184,2	K562	blood:
8	chr6:33683155..33686367-chr6:33732476..33736646,4	MCF-7	breast:
9	chr6:33727358..33730164-chr6:33732846..33736236,4	K562	blood:
10	chr6:33706772..33708979-chr6:33732721..33735158,2	K562	blood:
11	chr6:33733421..33736486-chr6:33736727..33739454,3	K562	blood:
12	chr6:33732354..33734796-chr6:33734914..33737120,3	K562	blood:
13	chr6:33678384..33680864-chr6:33733312..33735664,3	MCF-7	breast:
14	chr6:33733565..33735382-chr6:33741109..33742921,2	K562	blood:
15	chr6:33587894..33590790-chr6:33732523..33735377,2	MCF-7	breast:
16	chr6:33677635..33679706-chr6:33732667..33735011,2	K562	blood:
17	chr6:33734392..33738843-chr6:33747253..33751824,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137288	Chromatin interaction
ENSG00000161904	Chromatin interaction
ENSG00000096433	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1359781	0.82[CHB][hapmap]
rs2296748	0.81[CHB][hapmap]
rs4711345	0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4713677	0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6904716	0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6925273	0.84[ASN][1000 genomes]
rs747695	0.83[ASN][1000 genomes]
rs767896	0.86[JPT][hapmap]
rs9394166	0.82[CHB][hapmap]
rs943467	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33715200-33737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33723400-33736600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:33726400-33738200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:33729000-33736200	Weak transcription	HSMM	muscle
5	chr6:33729800-33734800	Weak transcription	HSMMtube	muscle
6	chr6:33730000-33738600	Weak transcription	A549	lung
7	chr6:33730200-33736400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:33730200-33737800	Weak transcription	Right Atrium	heart
9	chr6:33730200-33738200	Weak transcription	Colonic Mucosa	Colon
10	chr6:33730200-33738400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:33730600-33738600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:33730800-33736000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:33730800-33736600	Weak transcription	Brain Substantia Nigra	brain
14	chr6:33730800-33737600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:33730800-33738600	Weak transcription	Liver	Liver
16	chr6:33731400-33738400	Weak transcription	Spleen	Spleen
17	chr6:33731600-33738200	Weak transcription	Right Ventricle	heart
18	chr6:33731800-33735400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:33732000-33736200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:33732600-33742400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:33733800-33736400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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