Variant report

Variant	rs7557924
Chromosome Location	chr2:178436175-178436176
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10171135	1.00[JPT][hapmap]
rs10180514	1.00[JPT][hapmap]
rs10181259	1.00[JPT][hapmap]
rs10184488	1.00[JPT][hapmap]
rs10190306	1.00[JPT][hapmap]
rs10497505	1.00[JPT][hapmap]
rs10497506	1.00[JPT][hapmap]
rs10497509	1.00[JPT][hapmap]
rs10754987	1.00[JPT][hapmap]
rs10754988	1.00[JPT][hapmap]
rs10803911	1.00[JPT][hapmap]
rs10803912	1.00[JPT][hapmap]
rs10930788	1.00[JPT][hapmap]
rs10930793	1.00[JPT][hapmap]
rs10930796	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1106075	1.00[CHB][hapmap]
rs11679519	1.00[JPT][hapmap]
rs11889272	1.00[JPT][hapmap]
rs11901288	1.00[ASN][1000 genomes]
rs11902352	1.00[ASN][1000 genomes]
rs12478545	1.00[JPT][hapmap]
rs13014417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13431091	1.00[JPT][hapmap]
rs1348851	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1374438	1.00[JPT][hapmap]
rs1446837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1446838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1530965	1.00[JPT][hapmap]
rs16865189	1.00[JPT][hapmap]
rs16865191	1.00[JPT][hapmap]
rs16865279	0.83[EUR][1000 genomes]
rs16865322	1.00[JPT][hapmap]
rs16865324	1.00[JPT][hapmap]
rs16865337	1.00[JPT][hapmap]
rs16865342	0.82[ASN][1000 genomes]
rs16865343	1.00[CHB][hapmap]
rs16865351	0.82[ASN][1000 genomes]
rs16865357	0.82[ASN][1000 genomes]
rs16865359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16865365	0.82[ASN][1000 genomes]
rs16865376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16865377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16865379	0.82[ASN][1000 genomes]
rs16865385	0.82[ASN][1000 genomes]
rs16865451	1.00[CHB][hapmap]
rs16865493	1.00[CHB][hapmap]
rs16865498	1.00[CHB][hapmap]
rs16865576	1.00[CHB][hapmap]
rs1867905	1.00[JPT][hapmap]
rs1901823	1.00[JPT][hapmap]
rs1965180	1.00[ASN][1000 genomes]
rs2167902	1.00[JPT][hapmap]
rs2218575	1.00[JPT][hapmap]
rs2293475	1.00[JPT][hapmap]
rs2364851	1.00[JPT][hapmap]
rs2364852	1.00[JPT][hapmap]
rs3754989	1.00[JPT][hapmap]
rs3813260	1.00[JPT][hapmap]
rs4243389	1.00[JPT][hapmap]
rs4402804	1.00[JPT][hapmap]
rs4585065	1.00[JPT][hapmap]
rs4893829	1.00[JPT][hapmap]
rs4893940	1.00[JPT][hapmap]
rs4893942	1.00[JPT][hapmap]
rs59466016	1.00[ASN][1000 genomes]
rs60102399	0.82[ASN][1000 genomes]
rs6433666	1.00[JPT][hapmap]
rs6433677	1.00[JPT][hapmap]
rs6710109	1.00[JPT][hapmap]
rs6712695	1.00[ASN][1000 genomes]
rs6723014	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6725331	1.00[JPT][hapmap]
rs6731684	1.00[CHB][hapmap]
rs6732250	1.00[JPT][hapmap]
rs6737342	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6744488	1.00[JPT][hapmap]
rs6748696	1.00[CHB][hapmap]
rs6752528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6756948	1.00[CHB][hapmap]
rs6760470	1.00[ASN][1000 genomes]
rs7570297	1.00[JPT][hapmap]
rs7585952	1.00[JPT][hapmap]
rs7588049	1.00[JPT][hapmap]
rs7594073	1.00[JPT][hapmap]
rs7601132	1.00[JPT][hapmap]
rs7604668	1.00[JPT][hapmap]
rs935426	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2762964	chr2:178416394-178481818	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv3506731	chr2:178416851-178482200	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv3506732	chr2:178416851-178482200	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
6	esv3520312	chr2:178417102-178482200	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv3520313	chr2:178417102-178482200	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178434800-178438000	Enhancers	Colon Smooth Muscle	Colon
2	chr2:178435000-178438200	Enhancers	HepG2	liver
3	chr2:178435400-178436800	Enhancers	Pancreatic Islets	Pancreatic Islet

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