The 2.0 version of rSNPBase

Variant report

Variant rs16865342
Chromosome Location chr2:178415000-178415001
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178358600-178417000 Weak transcription Aorta Aorta
2 chr2:178364400-178416600 Weak transcription Esophagus oesophagus
3 chr2:178372800-178416600 Weak transcription A549 lung
4 chr2:178376200-178416600 Weak transcription Pancreas Pancrea
5 chr2:178388600-178416600 Weak transcription Muscle Satellite Cultured Cells --
6 chr2:178389000-178416800 Weak transcription Small Intestine intestine
7 chr2:178389200-178416600 Weak transcription Duodenum Mucosa Duodenum
8 chr2:178389800-178416800 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr2:178390600-178416600 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr2:178392000-178416800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr2:178401000-178416600 Weak transcription Lung lung
12 chr2:178402800-178416600 Weak transcription Stomach Smooth Muscle stomach
13 chr2:178403600-178416600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr2:178403800-178416600 Weak transcription Brain Substantia Nigra brain
15 chr2:178403800-178416800 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr2:178405400-178416600 Weak transcription Monocytes-CD14+_RO01746 blood
17 chr2:178405400-178416800 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr2:178406200-178416600 Weak transcription HepG2 liver
19 chr2:178407800-178416800 Weak transcription Fetal Brain Male brain
20 chr2:178408800-178416600 Weak transcription HSMM muscle
21 chr2:178409400-178416400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr2:178409400-178416400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr2:178409600-178416600 Weak transcription Osteobl bone
24 chr2:178411400-178416800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr2:178411400-178416800 Weak transcription Primary T cells from cord blood blood
26 chr2:178411400-178416800 Weak transcription Primary hematopoietic stem cells blood
27 chr2:178411600-178416600 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr2:178412000-178416600 Weak transcription Adipose Nuclei Adipose
29 chr2:178412000-178417000 Enhancers HUVEC blood vessel
30 chr2:178413000-178416000 Enhancers Rectal Smooth Muscle rectum
31 chr2:178413400-178416800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr2:178413600-178415600 Weak transcription Fetal Stomach stomach
33 chr2:178413600-178416800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr2:178413800-178415800 Enhancers K562 blood
35 chr2:178414200-178416600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr2:178414200-178416600 Weak transcription GM12878-XiMat blood
37 chr2:178414400-178416800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr2:178414600-178415600 Weak transcription Fetal Kidney kidney
39 chr2:178414600-178416600 Weak transcription Fetal Lung lung
40 chr2:178414600-178416800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr2:178414800-178415200 Weak transcription Colon Smooth Muscle Colon
42 chr2:178414800-178416600 Weak transcription Fetal Brain Female brain
43 chr2:178415000-178415200 Enhancers Pancreatic Islets Pancreatic Islet
44 chr2:178415000-178417000 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015