Variant report

Variant	rs16865533
Chromosome Location	chr2:178524277-178524278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178524145..178525778-chr2:178526454..178528465,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1106075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901288	1.00[AMR][1000 genomes]
rs16865294	1.00[AMR][1000 genomes]
rs16865305	1.00[AMR][1000 genomes]
rs16865306	1.00[AMR][1000 genomes]
rs16865322	1.00[AMR][1000 genomes]
rs16865324	1.00[AMR][1000 genomes]
rs16865337	1.00[AMR][1000 genomes]
rs16865338	1.00[AMR][1000 genomes]
rs16865342	1.00[AMR][1000 genomes]
rs16865343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16865351	1.00[AMR][1000 genomes]
rs16865357	1.00[AMR][1000 genomes]
rs16865359	1.00[AMR][1000 genomes]
rs16865365	1.00[AMR][1000 genomes]
rs16865379	1.00[AMR][1000 genomes]
rs16865385	1.00[AMR][1000 genomes]
rs16865440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16865451	1.00[AMR][1000 genomes]
rs16865455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16865473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16865493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865748	1.00[AMR][1000 genomes]
rs1965180	1.00[AMR][1000 genomes]
rs2091441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4110136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55806282	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56876249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58287062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60636947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6712779	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731684	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977678	1.00[EUR][1000 genomes]
rs73977686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977694	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178517000-178524400	Weak transcription	Fetal Kidney	kidney
2	chr2:178517200-178530800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:178518600-178524400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:178519000-178524400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:178524000-178524600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:178524000-178525000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:178524000-178525000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr2:178524000-178525200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr2:178524000-178525800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:178524200-178524600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:178524200-178524600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr2:178524200-178524800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:178524200-178525200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:178524200-178525200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr2:178524200-178525800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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