The 2.0 version of rSNPBase

Variant report

Variant rs16865286
Chromosome Location chr2:178309564-178309565
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178287200-178310600 Weak transcription Stomach Mucosa stomach
2 chr2:178287600-178314200 Weak transcription Gastric stomach
3 chr2:178295400-178329800 Weak transcription Pancreas Pancrea
4 chr2:178295400-178330000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr2:178295400-178330200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr2:178296400-178397000 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr2:178296600-178319800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr2:178296800-178310000 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr2:178297000-178313400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr2:178297200-178315400 Strong transcription HepG2 liver
11 chr2:178297800-178312800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr2:178297800-178314200 Weak transcription Fetal Stomach stomach
13 chr2:178297800-178319600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr2:178297800-178329800 Weak transcription Ovary ovary
15 chr2:178298400-178309800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr2:178298400-178314200 Weak transcription Left Ventricle heart
17 chr2:178298800-178309600 Weak transcription Duodenum Mucosa Duodenum
18 chr2:178298800-178312600 Weak transcription HSMMtube muscle
19 chr2:178298800-178313600 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr2:178298800-178313800 Strong transcription Dnd41 blood
21 chr2:178298800-178314000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr2:178298800-178314000 Weak transcription Fetal Intestine Small intestine
23 chr2:178298800-178329200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr2:178298800-178329800 Weak transcription Colonic Mucosa Colon
25 chr2:178298800-178329800 Weak transcription Thymus Thymus
26 chr2:178298800-178330200 Weak transcription Aorta Aorta
27 chr2:178298800-178330200 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr2:178298800-178331600 Weak transcription NHDF-Ad bronchial
29 chr2:178298800-178336800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr2:178298800-178357800 Weak transcription Primary T killer naive cells fromperipheralblood blood
31 chr2:178299000-178310600 Weak transcription Lung lung
32 chr2:178299000-178312800 Weak transcription Liver Liver
33 chr2:178299000-178313200 Weak transcription Muscle Satellite Cultured Cells --
34 chr2:178299000-178313600 Weak transcription Fetal Lung lung
35 chr2:178299000-178313600 Weak transcription NH-A brain
36 chr2:178299000-178314000 Weak transcription Brain Hippocampus Middle brain
37 chr2:178299000-178329800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr2:178299000-178330200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr2:178299200-178313400 Weak transcription GM12878-XiMat blood
40 chr2:178299200-178313600 Weak transcription A549 lung
41 chr2:178299400-178309600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr2:178299400-178313600 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr2:178299400-178313600 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr2:178299400-178357800 Weak transcription Primary T killer memory cells from peripheral blood blood
45 chr2:178300000-178312000 Weak transcription Primary hematopoietic stem cells blood
46 chr2:178300800-178331400 Weak transcription Psoas Muscle Psoas
47 chr2:178301000-178330200 Weak transcription Brain Inferior Temporal Lobe brain
48 chr2:178301600-178339800 Weak transcription Small Intestine intestine
49 chr2:178301800-178339200 Weak transcription Hela-S3 cervix
50 chr2:178302200-178312800 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015