Variant report

Variant	rs75580099
Chromosome Location	chr3:60072920-60072921
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2752010	chr3:60067396-60288428	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1009063	chr3:60067866-60277128	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1013919	chr3:60067866-60284882	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv519855	chr3:60068730-60276722	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv460566	chr3:60068730-60276722	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv460567	chr3:60068730-60276722	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv590390	chr3:60068730-60276722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv590391	chr3:60068730-60277709	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1008586	chr3:60070974-60258108	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv536576	chr3:60070974-60258108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1009971	chr3:60070974-60397331	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1008267	chr3:60071947-60264461	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1007798	chr3:60071947-60277128	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv2763751	chr3:60071959-60292312	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60068600-60075800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:60071800-60073000	Enhancers	GM12878-XiMat	blood
3	chr3:60072200-60073000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:60072200-60073000	ZNF genes & repeats	Fetal Thymus	thymus
5	chr3:60072200-60074200	Enhancers	Dnd41	blood
6	chr3:60072400-60073000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:60072400-60073000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:60072400-60073000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr3:60072400-60073000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:60072400-60073000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:60072400-60073000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:60072400-60073000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:60072400-60073000	Enhancers	Esophagus	oesophagus
14	chr3:60072400-60073000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr3:60072400-60073000	Enhancers	NH-A	brain
16	chr3:60072400-60073000	Enhancers	NHEK	skin
17	chr3:60072400-60073200	Enhancers	K562	blood
18	chr3:60072800-60073000	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr3:60072800-60073000	Enhancers	Psoas Muscle	Psoas
20	chr3:60072800-60073000	Enhancers	Stomach Mucosa	stomach
21	chr3:60072800-60073200	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr3:60072800-60073200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:60072800-60073200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr3:60072800-60073400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr3:60072800-60075800	Weak transcription	Thymus	Thymus
26	chr3:60072800-60076000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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