Variant report

Variant	rs756227
Chromosome Location	chr4:90069964-90069965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10025332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516826	0.87[JPT][hapmap]
rs10516828	0.83[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs12507349	0.93[ASN][1000 genomes]
rs1398945	0.93[ASN][1000 genomes]
rs1513817	0.92[AFR][1000 genomes]
rs17015025	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs17770293	0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1996140	0.81[ASN][1000 genomes]
rs2280099	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs3822085	0.83[ASN][1000 genomes]
rs55806245	0.99[ASN][1000 genomes]
rs55996516	0.92[ASN][1000 genomes]
rs56111951	0.93[ASN][1000 genomes]
rs56147277	0.99[ASN][1000 genomes]
rs56165603	0.83[ASN][1000 genomes]
rs56344658	0.93[ASN][1000 genomes]
rs56355329	0.93[ASN][1000 genomes]
rs61082288	0.99[ASN][1000 genomes]
rs61295522	0.81[ASN][1000 genomes]
rs62306393	0.85[ASN][1000 genomes]
rs6822256	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs6825767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826021	0.90[AFR][1000 genomes]
rs6826703	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6832298	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs72668152	0.83[ASN][1000 genomes]
rs72668154	0.83[ASN][1000 genomes]
rs72668156	0.83[ASN][1000 genomes]
rs72668157	0.83[ASN][1000 genomes]
rs72668165	0.83[ASN][1000 genomes]
rs72668167	0.83[ASN][1000 genomes]
rs72668171	0.83[ASN][1000 genomes]
rs72668179	0.85[ASN][1000 genomes]
rs72668183	0.92[ASN][1000 genomes]
rs72668187	0.93[ASN][1000 genomes]
rs72668189	0.93[ASN][1000 genomes]
rs72668192	0.99[ASN][1000 genomes]
rs72668193	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs72668195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72670003	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72670004	0.81[ASN][1000 genomes]
rs72670006	0.81[ASN][1000 genomes]
rs72670007	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7660709	0.84[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7669140	0.85[ASN][1000 genomes]
rs7697393	0.90[AFR][1000 genomes]
rs8582	0.84[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs9993181	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470052	chr4:90055898-90075384	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv830002	chr4:90056232-90258865	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90056200-90071800	Weak transcription	Right Atrium	heart
2	chr4:90068400-90070600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:90069200-90070200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:90069400-90070200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:90069600-90070200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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