Variant report

Variant	rs7563594
Chromosome Location	chr2:212195836-212195837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1836733	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv584313	chr2:212176967-212224689	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212193600-212198200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:212194200-212199000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:212194800-212199000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:212195200-212196200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:212195400-212196400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:212195400-212198400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr2:212195400-212199000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:212195600-212196000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr2:212195600-212196000	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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