Variant report

Variant	rs1836733
Chromosome Location	chr2:212196304-212196305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10932371	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1595065	0.84[CEU][hapmap]
rs1816533	0.81[CEU][hapmap]
rs1821656	0.84[CEU][hapmap]
rs1836724	0.84[CEU][hapmap]
rs1836741	0.86[AMR][1000 genomes]
rs1836742	0.85[AMR][1000 genomes]
rs1836743	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1972820	0.83[CEU][hapmap]
rs4672610	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6747894	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7563594	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7599288	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv584313	chr2:212176967-212224689	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212193600-212198200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:212194200-212199000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:212194800-212199000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:212195400-212196400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:212195400-212198400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:212195400-212199000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:212196000-212196600	Enhancers	Hela-S3	cervix
8	chr2:212196000-212197600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:212196200-212196600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:212196200-212197000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:212196200-212197000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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