Variant report

Variant	rs6747894
Chromosome Location	chr2:212210170-212210171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10932371	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1583483	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1595062	0.82[AFR][1000 genomes]
rs1595065	0.88[CEU][hapmap]
rs1816533	0.85[CEU][hapmap]
rs1821656	0.84[CEU][hapmap]
rs1836724	0.88[CEU][hapmap]
rs1836733	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1836741	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1836742	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1836743	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1836744	0.96[ASN][1000 genomes]
rs1972820	0.87[CEU][hapmap]
rs2033648	0.80[ASN][1000 genomes]
rs4672610	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4673610	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72947621	0.81[EUR][1000 genomes]
rs7599288	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv584313	chr2:212176967-212224689	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212208600-212210400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:212209600-212210800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:212209600-212211200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:212209800-212210800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:212210000-212210400	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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