Variant report

Variant	rs4673610
Chromosome Location	chr2:212231024-212231025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:212229635..212231733-chr2:212236434..212239160,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10048757	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10932371	0.81[AMR][1000 genomes]
rs11895168	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12475523	0.92[ASN][1000 genomes]
rs13014117	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13025037	0.93[ASN][1000 genomes]
rs1583483	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1595062	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1595065	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1816533	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1821656	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1836724	0.84[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1972820	0.87[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2033648	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3791692	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3828243	0.85[JPT][hapmap]
rs4672610	0.85[EUR][1000 genomes]
rs4672612	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4673615	0.81[ASN][1000 genomes]
rs6710253	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6727172	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6728196	0.85[ASN][1000 genomes]
rs6747894	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs934607	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212214200-212232000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212225800-212232000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:212227200-212232400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:212230200-212232400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:212230400-212232400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:212231000-212232200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:212231000-212232400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:212231000-212232600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:212231000-212232600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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