Variant report

Variant	rs6727172
Chromosome Location	chr2:212225745-212225746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1583483	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1595065	0.88[CEU][hapmap]
rs1816533	0.85[CEU][hapmap]
rs1821656	0.88[CEU][hapmap]
rs1836724	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1836741	0.82[ASN][1000 genomes]
rs1836742	0.82[ASN][1000 genomes]
rs1836743	0.81[ASN][1000 genomes]
rs1836744	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1972820	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs2033648	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4673610	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7571245	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599288	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212214200-212232000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212222600-212225800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:212222800-212227200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:212223000-212227000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:212223200-212225800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:212223200-212227400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:212223400-212225800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr2:212223400-212226000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:212224000-212227400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:212225200-212225800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:212225200-212225800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:212225600-212226200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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