Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10048757	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11895168	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12475523	0.89[EUR][1000 genomes]
rs1583483	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1595062	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1595065	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1816533	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1821656	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1836724	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs1836741	0.84[ASN][1000 genomes]
rs1836742	0.84[ASN][1000 genomes]
rs1836743	0.82[ASN][1000 genomes]
rs1836744	0.82[ASN][1000 genomes]
rs1972820	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs4672612	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs4673610	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6727172	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6747894	0.80[ASN][1000 genomes]
rs7571245	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7599288	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834523	chr2:212163236-212331393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv875776	chr2:212196908-212264818	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212232000-212234400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212233200-212234400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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