Variant report

Variant	rs7564387
Chromosome Location	chr2:116127506-116127507
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10165687	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10167944	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10180987	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10181472	0.96[ASN][1000 genomes]
rs10181696	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10451600	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10496490	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10496491	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11123302	0.83[ASN][1000 genomes]
rs1155664	0.96[ASN][1000 genomes]
rs1159302	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11883530	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11896853	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11898241	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11898436	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11902350	0.96[ASN][1000 genomes]
rs12474916	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12478263	0.98[ASN][1000 genomes]
rs12478502	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13017848	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1356384	0.88[ASN][1000 genomes]
rs1400660	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1400662	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1400663	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1400667	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1400668	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1402445	1.00[ASN][1000 genomes]
rs1517361	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1517362	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1517371	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1521071	0.96[ASN][1000 genomes]
rs1521075	0.98[ASN][1000 genomes]
rs1521078	0.86[ASN][1000 genomes]
rs1812952	0.89[ASN][1000 genomes]
rs1949402	0.98[ASN][1000 genomes]
rs2176955	0.96[ASN][1000 genomes]
rs2420815	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2420819	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2421100	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4268936	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4493269	0.84[ASN][1000 genomes]
rs4610067	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4849396	0.96[ASN][1000 genomes]
rs6542256	0.87[ASN][1000 genomes]
rs6542259	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6714356	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6716722	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6749876	0.95[ASN][1000 genomes]
rs6760151	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7422121	0.97[ASN][1000 genomes]
rs7561031	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7565854	0.84[EUR][1000 genomes]
rs7568698	0.89[ASN][1000 genomes]
rs7571103	0.97[ASN][1000 genomes]
rs7578669	0.96[ASN][1000 genomes]
rs7589983	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7591002	0.83[EUR][1000 genomes]
rs7605036	0.89[ASN][1000 genomes]
rs908599	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs949889	0.96[ASN][1000 genomes]
rs963850	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs963851	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs975453	0.84[ASN][1000 genomes]
rs992217	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs992218	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs993986	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv963924	chr2:116110836-116134022	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116119000-116131800	Weak transcription	Pancreas	Pancrea
2	chr2:116122400-116130200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:116126600-116127600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links