Variant report
| Variant | rs7591002 |
|---|---|
| Chromosome Location | chr2:116057300-116057301 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10180987 | 0.86[EUR][1000 genomes] |
| rs10192079 | 0.83[ASN][1000 genomes] |
| rs10199934 | 0.89[ASN][1000 genomes] |
| rs1159302 | 0.83[EUR][1000 genomes] |
| rs11691866 | 0.98[ASN][1000 genomes] |
| rs11695752 | 0.98[ASN][1000 genomes] |
| rs11896853 | 0.84[EUR][1000 genomes] |
| rs12478502 | 0.82[EUR][1000 genomes] |
| rs1400667 | 0.83[EUR][1000 genomes] |
| rs1516312 | 0.87[ASN][1000 genomes] |
| rs1517371 | 0.83[EUR][1000 genomes] |
| rs2176250 | 0.85[ASN][1000 genomes] |
| rs2420815 | 0.88[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4241133 | 0.87[AMR][1000 genomes] |
| rs4353659 | 0.89[ASN][1000 genomes] |
| rs4353660 | 0.88[ASN][1000 genomes] |
| rs4429481 | 1.00[ASN][1000 genomes] |
| rs4610066 | 0.89[ASN][1000 genomes] |
| rs4624386 | 0.98[ASN][1000 genomes] |
| rs4848383 | 0.87[ASN][1000 genomes] |
| rs4849388 | 0.89[ASN][1000 genomes] |
| rs6714356 | 0.83[EUR][1000 genomes] |
| rs6716722 | 0.84[EUR][1000 genomes] |
| rs6726183 | 0.84[AMR][1000 genomes] |
| rs6760151 | 0.83[EUR][1000 genomes] |
| rs7564387 | 0.83[EUR][1000 genomes] |
| rs7565854 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7587771 | 0.87[ASN][1000 genomes] |
| rs7598070 | 0.98[ASN][1000 genomes] |
| rs7606313 | 1.00[ASN][1000 genomes] |
| rs908599 | 0.92[EUR][1000 genomes] |
| rs992217 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001542 | chr2:115920847-116082585 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv834339 | chr2:115953298-116132979 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7591002 | GPI | trans | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:116050800-116068000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
