Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10181696	0.81[EUR][1000 genomes]
rs10496490	0.82[EUR][1000 genomes]
rs10496491	0.83[EUR][1000 genomes]
rs11678564	0.93[ASN][1000 genomes]
rs11690705	0.89[ASN][1000 genomes]
rs11898241	0.81[ASN][1000 genomes]
rs12611770	0.93[ASN][1000 genomes]
rs13017848	0.81[EUR][1000 genomes]
rs1400668	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1607914	0.93[ASN][1000 genomes]
rs2420819	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4614945	0.99[ASN][1000 genomes]
rs4629160	0.96[ASN][1000 genomes]
rs62167292	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62167293	0.91[ASN][1000 genomes]
rs6726183	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7561031	0.82[EUR][1000 genomes]
rs7563562	0.93[ASN][1000 genomes]
rs7565854	0.83[AMR][1000 genomes]
rs7591002	0.87[AMR][1000 genomes]
rs908600	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs992218	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs993986	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116050800-116068000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:116052800-116056000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:116053400-116056400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:116053800-116056200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:116054000-116055200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:116054000-116057000	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: