Variant report

Variant	rs4629160
Chromosome Location	chr2:116060217-116060218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11678564	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11690705	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11695752	0.80[AMR][1000 genomes]
rs12611770	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1400668	0.81[ASN][1000 genomes]
rs1607914	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420819	0.81[ASN][1000 genomes]
rs4241133	0.96[ASN][1000 genomes]
rs4429481	0.83[AMR][1000 genomes]
rs4614945	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62167292	0.90[ASN][1000 genomes]
rs62167293	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6726183	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7563562	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7606313	0.82[AMR][1000 genomes]
rs908600	0.90[ASN][1000 genomes]
rs992218	0.81[ASN][1000 genomes]
rs993986	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116050800-116068000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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