Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10181696	0.80[EUR][1000 genomes]
rs10451600	0.81[ASN][1000 genomes]
rs10496490	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10496491	0.81[EUR][1000 genomes]
rs11678564	0.93[ASN][1000 genomes]
rs11690705	0.90[ASN][1000 genomes]
rs11883530	0.81[ASN][1000 genomes]
rs11898241	0.81[ASN][1000 genomes]
rs11898436	0.81[ASN][1000 genomes]
rs12466862	0.81[AMR][1000 genomes]
rs12611770	0.93[ASN][1000 genomes]
rs13017848	0.80[EUR][1000 genomes]
rs1356384	0.81[ASN][1000 genomes]
rs1400660	0.81[ASN][1000 genomes]
rs1400668	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1517362	0.81[ASN][1000 genomes]
rs1607914	0.93[ASN][1000 genomes]
rs2420819	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2421100	0.81[ASN][1000 genomes]
rs4241133	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4268936	0.81[ASN][1000 genomes]
rs4610067	0.81[ASN][1000 genomes]
rs4614945	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4629160	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62167292	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62167293	0.92[ASN][1000 genomes]
rs6542259	0.81[ASN][1000 genomes]
rs7561031	0.80[EUR][1000 genomes]
rs7563562	0.93[ASN][1000 genomes]
rs7565854	0.85[AMR][1000 genomes]
rs7589983	0.81[ASN][1000 genomes]
rs7591002	0.84[AMR][1000 genomes]
rs908599	0.81[ASN][1000 genomes]
rs908600	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs992218	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs993986	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv964349	chr2:116051086-116054027	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116043000-116051600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:116043400-116052400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:116050800-116051200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:116050800-116054000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:116050800-116068000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search: