Variant report

Variant	rs7598070
Chromosome Location	chr2:116041433-116041434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10192079	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10199934	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11690705	0.84[AMR][1000 genomes]
rs11691866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11695752	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12474916	0.82[EUR][1000 genomes]
rs1356384	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1516312	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1521078	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1949402	0.81[EUR][1000 genomes]
rs2176250	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4353659	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4353660	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4429481	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4493269	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4610066	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4614945	0.82[AMR][1000 genomes]
rs4624386	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4848383	0.89[ASN][1000 genomes]
rs4849388	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7563562	0.84[AMR][1000 genomes]
rs7565854	0.96[ASN][1000 genomes]
rs7568698	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7587771	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7591002	0.98[ASN][1000 genomes]
rs7605036	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7606313	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs975453	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116039000-116042200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:116040600-116043600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:116041400-116041600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links