Variant report

Variant	rs7564445
Chromosome Location	chr2:31032911-31032912
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10153602	1.00[AMR][1000 genomes]
rs17010520	1.00[MEX][hapmap]
rs6739240	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833659	chr2:31020572-31171505	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31028200-31034200	Weak transcription	Esophagus	oesophagus
2	chr2:31030200-31033200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:31030200-31033800	Enhancers	Stomach Mucosa	stomach
4	chr2:31030800-31033000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:31030800-31033600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:31031000-31035600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:31031400-31033800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:31032000-31033000	Enhancers	Gastric	stomach
9	chr2:31032000-31034600	Enhancers	Pancreas	Pancrea
10	chr2:31032200-31033200	Enhancers	Lung	lung
11	chr2:31032600-31033000	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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