Variant report

Variant	rs7565002
Chromosome Location	chr2:63803259-63803260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73934751	1.00[AMR][1000 genomes]
rs73937814	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63777400-63806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:63780200-63814800	Weak transcription	Psoas Muscle	Psoas
3	chr2:63781000-63804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:63789000-63808200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:63789000-63808200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:63795000-63805600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:63797000-63805400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:63799200-63808200	Weak transcription	Aorta	Aorta
9	chr2:63799400-63807600	Weak transcription	Adipose Nuclei	Adipose
10	chr2:63799800-63803600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:63801000-63814400	Weak transcription	Primary B cells from cord blood	blood
12	chr2:63801800-63805600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr2:63802000-63805600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:63802000-63805600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:63802200-63803600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:63802200-63805600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:63802400-63804200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:63803200-63803400	Flanking Active TSS	Fetal Heart	heart
19	chr2:63803200-63804000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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