Variant report

Variant	rs7566595
Chromosome Location	chr2:67194426-67194427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17032737	1.00[AMR][1000 genomes]
rs17032753	1.00[AMR][1000 genomes]
rs6744361	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6754345	1.00[AMR][1000 genomes]
rs7593203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67190800-67195200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:67191800-67195400	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:67192000-67196400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:67193600-67195000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:67193800-67194600	Enhancers	Fetal Heart	heart
6	chr2:67194200-67195000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:67194200-67195400	Enhancers	Pancreas	Pancrea
8	chr2:67194400-67195000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:67194400-67195400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:67194400-67195600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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