Variant report

Variant	rs7568898
Chromosome Location	chr2:74271577-74271578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74211059..74212577-chr2:74271171..74274101,2	MCF-7	breast:
2	chr2:74269549..74271740-chr2:74273522..74276997,3	MCF-7	breast:
3	chr2:74213257..74214992-chr2:74269851..74272694,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235499	Chromatin interaction
ENSG00000187605	Chromatin interaction
ENSG00000255989	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10164943	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10168410	0.83[ASN][1000 genomes]
rs10179742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10182376	0.88[ASN][1000 genomes]
rs10184542	0.93[ASN][1000 genomes]
rs10186781	0.88[ASN][1000 genomes]
rs10191539	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10192993	0.88[ASN][1000 genomes]
rs10198884	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10200470	0.89[ASN][1000 genomes]
rs11126424	0.86[ASN][1000 genomes]
rs11884748	0.84[ASN][1000 genomes]
rs11885172	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11886928	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12328927	0.90[ASN][1000 genomes]
rs12713804	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs12713806	0.90[ASN][1000 genomes]
rs12713808	0.84[ASN][1000 genomes]
rs12713810	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13006301	0.84[ASN][1000 genomes]
rs13006407	0.90[ASN][1000 genomes]
rs13014576	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13387010	0.81[ASN][1000 genomes]
rs13387174	1.00[CEU][hapmap]
rs13387412	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13396777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13413697	0.88[ASN][1000 genomes]
rs13426799	0.88[ASN][1000 genomes]
rs17009553	1.00[CEU][hapmap]
rs28450901	0.86[ASN][1000 genomes]
rs28460865	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3902790	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4073048	0.83[ASN][1000 genomes]
rs4241258	0.84[CHB][hapmap]
rs4241260	0.84[ASN][1000 genomes]
rs4331526	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4338985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4364046	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4371381	0.84[ASN][1000 genomes]
rs4416242	0.90[ASN][1000 genomes]
rs4574138	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4578887	0.83[ASN][1000 genomes]
rs4621184	0.84[ASN][1000 genomes]
rs4852326	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4853003	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4853005	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4853006	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4853007	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4853009	0.83[ASN][1000 genomes]
rs6546886	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6546887	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6546889	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6706327	0.88[ASN][1000 genomes]
rs6741544	0.83[ASN][1000 genomes]
rs6745236	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6745576	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6745776	1.00[CEU][hapmap]
rs6745792	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6755711	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6756474	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7560668	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7584777	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7587991	0.83[ASN][1000 genomes]
rs7589915	0.90[ASN][1000 genomes]
rs7592749	0.83[ASN][1000 genomes]
rs7595401	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7601526	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7606491	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9309478	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3584956	chr2:74197109-74317135	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv818048	chr2:74225434-74313080	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74231600-74273800	Weak transcription	A549	lung
2	chr2:74240000-74276200	Weak transcription	Hela-S3	cervix
3	chr2:74260000-74273200	Weak transcription	Brain Germinal Matrix	brain
4	chr2:74260200-74271600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:74260200-74272600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:74260200-74273600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:74260400-74271600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:74260800-74278400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:74264600-74273800	Weak transcription	Colonic Mucosa	Colon
10	chr2:74264800-74272200	Weak transcription	NHEK	skin
11	chr2:74264800-74311000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:74265000-74272600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:74265000-74272600	Weak transcription	Fetal Stomach	stomach
14	chr2:74265000-74272600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:74265000-74272800	Weak transcription	Dnd41	blood
16	chr2:74265000-74300600	Weak transcription	Fetal Brain Male	brain
17	chr2:74265200-74273400	Weak transcription	Liver	Liver
18	chr2:74265200-74273400	Enhancers	K562	blood
19	chr2:74265200-74273600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:74265400-74272200	Weak transcription	HMEC	breast
21	chr2:74265400-74272600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:74265400-74272600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:74265400-74273600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:74265400-74273800	Weak transcription	NHLF	lung
25	chr2:74265400-74275600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:74265400-74315000	Weak transcription	HUVEC	blood vessel
27	chr2:74265600-74271800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:74265600-74272400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:74265600-74272400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:74265600-74272600	Weak transcription	Esophagus	oesophagus
31	chr2:74265600-74273400	Weak transcription	Adipose Nuclei	Adipose
32	chr2:74265600-74275400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr2:74265800-74273600	Weak transcription	Left Ventricle	heart
34	chr2:74266000-74272600	Weak transcription	Right Atrium	heart
35	chr2:74266200-74273600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr2:74266400-74287200	Weak transcription	HSMM	muscle
37	chr2:74267400-74271600	Weak transcription	Brain Substantia Nigra	brain
38	chr2:74267600-74273600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr2:74267800-74271600	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:74267800-74273400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr2:74268200-74272600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:74268400-74273400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:74268600-74273000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr2:74268600-74273200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr2:74268600-74273200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr2:74268600-74273400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:74268600-74273400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:74268600-74273400	Weak transcription	Spleen	Spleen
49	chr2:74268600-74273800	Weak transcription	Right Ventricle	heart
50	chr2:74268800-74274800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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