Variant report

Variant	rs7572606
Chromosome Location	chr2:58146323-58146324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12104766	1.00[AMR][1000 genomes]
rs12105180	1.00[AMR][1000 genomes]
rs1520963	1.00[AMR][1000 genomes]
rs17039675	1.00[AMR][1000 genomes]
rs17049103	1.00[AMR][1000 genomes]
rs17049119	1.00[AMR][1000 genomes]
rs17049122	1.00[AMR][1000 genomes]
rs17049169	1.00[AMR][1000 genomes]
rs17049188	1.00[AMR][1000 genomes]
rs17049192	1.00[AMR][1000 genomes]
rs17049195	1.00[AMR][1000 genomes]
rs17049218	1.00[AMR][1000 genomes]
rs17049234	1.00[AMR][1000 genomes]
rs17049246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17049251	1.00[ASW][hapmap];0.90[LWK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41507950	1.00[AMR][1000 genomes]
rs55811651	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56193241	1.00[AMR][1000 genomes]
rs56199322	1.00[AMR][1000 genomes]
rs56393555	1.00[AMR][1000 genomes]
rs58333652	1.00[AMR][1000 genomes]
rs58838819	1.00[AMR][1000 genomes]
rs59146679	1.00[AMR][1000 genomes]
rs59163667	1.00[AMR][1000 genomes]
rs59235511	1.00[AMR][1000 genomes]
rs59691581	1.00[AMR][1000 genomes]
rs60453955	1.00[AMR][1000 genomes]
rs60462720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60765249	1.00[AMR][1000 genomes]
rs6751864	1.00[AMR][1000 genomes]
rs72939601	1.00[AMR][1000 genomes]
rs72941503	1.00[AMR][1000 genomes]
rs72941525	1.00[AMR][1000 genomes]
rs72941526	1.00[AMR][1000 genomes]
rs72941532	1.00[AMR][1000 genomes]
rs72941544	1.00[AMR][1000 genomes]
rs72941589	1.00[AMR][1000 genomes]
rs72943305	1.00[AMR][1000 genomes]
rs72943312	1.00[AMR][1000 genomes]
rs72943328	1.00[AMR][1000 genomes]
rs72943335	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943342	1.00[AMR][1000 genomes]
rs72943350	1.00[AMR][1000 genomes]
rs72943356	1.00[AMR][1000 genomes]
rs72943358	1.00[AMR][1000 genomes]
rs72943369	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73941649	1.00[AMR][1000 genomes]
rs73942209	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942219	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942274	1.00[AMR][1000 genomes]
rs73942288	1.00[AMR][1000 genomes]
rs73944124	1.00[AMR][1000 genomes]
rs73944146	1.00[AMR][1000 genomes]
rs7600283	1.00[AMR][1000 genomes]
rs952625	1.00[AMR][1000 genomes]
rs952626	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007118	chr2:57562051-58147588	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58137800-58148000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:58139200-58147800	Weak transcription	Brain Substantia Nigra	brain
3	chr2:58145600-58146400	Enhancers	Fetal Brain Male	brain
4	chr2:58145600-58146800	Weak transcription	Brain Germinal Matrix	brain
5	chr2:58146200-58148800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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