Variant report

Variant	rs7573807
Chromosome Location	chr2:212687864-212687865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10190218	0.92[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1020126	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs10203750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1159709	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs12475812	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs1371198	0.92[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs1371203	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1439239	0.95[ASN][1000 genomes]
rs2218106	0.95[ASN][1000 genomes]
rs4673636	0.96[ASN][1000 genomes]
rs6435675	1.00[ASN][1000 genomes]
rs6435677	0.95[ASN][1000 genomes]
rs7564307	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9288443	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875785	chr2:212683946-212752193	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212687600-212688200	Enhancers	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links