Variant report

Variant	rs9288443
Chromosome Location	chr2:212738902-212738903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10190218	0.94[JPT][hapmap]
rs1020126	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10203750	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs1159709	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs12475812	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1371198	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1371203	0.86[JPT][hapmap]
rs6435677	0.85[JPT][hapmap]
rs7564307	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7573807	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875785	chr2:212683946-212752193	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875786	chr2:212715410-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875787	chr2:212722988-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv875788	chr2:212722988-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv875789	chr2:212722988-212761152	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv875790	chr2:212731514-212752193	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv584323	chr2:212731514-212783175	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212734200-212741800	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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