Variant report

Variant	rs7576726
Chromosome Location	chr2:72903734-72903735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72901546..72903873-chr2:72916111..72918469,2	MCF-7	breast:
2	chr2:72903226..72905209-chr2:72919789..72921712,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11894152	1.00[CEU][hapmap]
rs13014663	1.00[CEU][hapmap]
rs13025483	1.00[CEU][hapmap]
rs17008355	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6720889	0.81[ASW][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];0.86[YRI][hapmap]
rs6756070	0.82[MKK][hapmap]
rs73945610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874265	chr2:72789764-72982609	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72858400-72904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:72873000-72903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:72892000-72905400	Weak transcription	Pancreas	Pancrea
4	chr2:72896000-72905400	Weak transcription	Psoas Muscle	Psoas
5	chr2:72896800-72903800	Weak transcription	NHEK	skin
6	chr2:72896800-72943000	Weak transcription	Primary T cells from cord blood	blood
7	chr2:72897000-72904000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:72897000-72905200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:72897000-72912600	Weak transcription	NHLF	lung
10	chr2:72897800-72909800	Weak transcription	Brain Germinal Matrix	brain
11	chr2:72899400-72905400	Weak transcription	Right Ventricle	heart
12	chr2:72900000-72905400	Weak transcription	Small Intestine	intestine
13	chr2:72900200-72911800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:72901600-72905600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:72901600-72919200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:72901800-72904200	Weak transcription	HMEC	breast
17	chr2:72901800-72905000	Enhancers	HepG2	liver
18	chr2:72902200-72904200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:72902400-72905200	Enhancers	Fetal Heart	heart
20	chr2:72902600-72913200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr2:72902600-72921200	Weak transcription	Adipose Nuclei	Adipose
22	chr2:72902800-72909200	Weak transcription	Fetal Intestine Small	intestine
23	chr2:72903000-72904200	Weak transcription	Ovary	ovary
24	chr2:72903000-72905000	Enhancers	Brain Hippocampus Middle	brain
25	chr2:72903000-72905400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:72903000-72905400	Weak transcription	Left Ventricle	heart
27	chr2:72903000-72909400	Weak transcription	Gastric	stomach
28	chr2:72903000-72910600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr2:72903200-72903800	Enhancers	Fetal Lung	lung
30	chr2:72903200-72904400	Flanking Active TSS	A549	lung
31	chr2:72903400-72903800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:72903400-72903800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr2:72903400-72903800	Enhancers	Rectal Smooth Muscle	rectum
34	chr2:72903400-72904200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:72903400-72904400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:72903400-72904400	Enhancers	NHDF-Ad	bronchial
37	chr2:72903400-72904800	Enhancers	NH-A	brain
38	chr2:72903400-72905600	Enhancers	Fetal Stomach	stomach
39	chr2:72903400-72905800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr2:72903600-72904000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr2:72903600-72904400	Enhancers	Brain Angular Gyrus	brain
42	chr2:72903600-72904800	Enhancers	Stomach Mucosa	stomach
43	chr2:72903600-72905000	Enhancers	Brain Anterior Caudate	brain
44	chr2:72903600-72905400	Enhancers	Brain Substantia Nigra	brain
45	chr2:72903600-72906000	Enhancers	Fetal Kidney	kidney
46	chr2:72903600-72937400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links