Variant report

Variant	rs7577916
Chromosome Location	chr2:124869709-124869710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1036608	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10496628	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs12466819	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17010876	0.92[GIH][hapmap]
rs17278676	0.81[GIH][hapmap]
rs17391285	0.89[GIH][hapmap]
rs4347847	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4449139	0.81[CHD][hapmap];0.83[MEX][hapmap]
rs4450605	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4538203	0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs4637130	0.89[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs868995	0.89[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124867600-124870400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr2:124868400-124870200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:124868600-124870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:124868800-124870200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:124869600-124870400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:124869600-124870400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:124869600-124870600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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