Variant report

Variant	rs17278676
Chromosome Location	chr2:124849389-124849390
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1036609	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1213938	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs1213942	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs1213945	0.83[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs1213946	0.83[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs1213948	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs1213950	1.00[ASW][hapmap];0.83[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1213956	0.89[ASW][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1213958	0.83[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs1213962	0.82[CHB][hapmap]
rs1228168	0.83[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1347876	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17010766	0.86[CHB][hapmap]
rs17010827	0.86[CHB][hapmap];0.83[CHD][hapmap];0.80[ASN][1000 genomes]
rs17010848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17010876	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs17391285	0.86[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap]
rs1816698	1.00[ASW][hapmap];0.83[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap]
rs1898788	0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2439003	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7567584	0.86[CHB][hapmap]
rs7577916	0.81[GIH][hapmap]
rs868995	1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124847400-124849400	Weak transcription	Fetal Intestine Large	intestine
2	chr2:124848800-124850000	Enhancers	Duodenum Mucosa	Duodenum
3	chr2:124849200-124849400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:124849200-124850000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:124849200-124851000	Enhancers	Fetal Intestine Small	intestine

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