Variant report

Variant	rs1898788
Chromosome Location	chr2:124838528-124838529
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1036609	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1213938	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs1213942	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs1213945	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs1213946	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs1213948	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs1213950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1213956	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1213958	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1213962	0.96[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1228168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1347876	0.84[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17010766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17010827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17010848	0.82[ASN][1000 genomes]
rs17010876	0.86[CHB][hapmap]
rs17278676	0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1816698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2439003	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7567584	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs868995	0.86[CHB][hapmap]
rs959320	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2762279	chr2:124827023-124840027	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124835400-124838800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:124836600-124839600	Enhancers	Fetal Intestine Small	intestine
3	chr2:124837400-124838600	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:124837800-124839200	Weak transcription	Fetal Intestine Large	intestine
5	chr2:124838000-124839400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:124838200-124839400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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