Variant report

Variant	rs1347876
Chromosome Location	chr2:124847337-124847338
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1036609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1213938	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs1213942	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs1213945	0.84[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap]
rs1213946	0.84[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap]
rs1213948	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs1213950	0.84[CEU][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs1213956	0.80[CEU][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap]
rs1213958	0.84[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1228168	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs17010766	0.81[CHD][hapmap]
rs17010827	0.84[CHD][hapmap]
rs17010848	0.89[CHB][hapmap];0.88[ASN][1000 genomes]
rs17010876	0.93[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs17278676	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17391285	0.84[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap]
rs1816698	0.84[CEU][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs1898788	0.84[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2439003	0.83[EUR][1000 genomes]
rs7567584	0.86[CHB][hapmap]
rs868995	0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124846400-124847400	Enhancers	Fetal Intestine Large	intestine
2	chr2:124847000-124847400	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links