Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1213938	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs1213942	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs1213945	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1213946	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1213948	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1213950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1213956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1213958	0.93[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1213962	0.83[CHB][hapmap];0.86[JPT][hapmap];0.99[ASN][1000 genomes]
rs1228168	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1347876	0.86[CHB][hapmap]
rs17010766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17010827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17010848	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17010876	0.86[CHB][hapmap]
rs17278676	0.86[CHB][hapmap]
rs1816698	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1898788	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2439003	0.90[ASN][1000 genomes]
rs868995	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124803000-124805600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr2:124803200-124804200	Enhancers	HUES48 Cell Line	embryonic stem cell

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